After the incident at Zanzibar a group by the name of FOX HOUND(Solid Snakes old unit.) Had over powered a nuclear facility base on shadow Moses island, Alaska and hijacked a military testing weapon. Government and corporate officials observing the testing had been taken hostage. The Terrorists demands where strangely odd but fairly simple: The Remains of Big Boss be sent to them within 24 hours or a nuclear Warhead would be launched. Solid Snake now retired from FOXHOUND is called on to duty by former Fox hound member Colonel Roy Campbell to infiltrate the base, rescue hostages, and disable nuclear capabilities.

The Leader of the new FOX HOUND unit was granted the code name of Liquid Snake. An individual with the same codename as Solid Snake and with identical physical attributes. Liquid, Teamed with other members completed the FOXHOUND clan. Agents with their own unique features with the codenames of Revolver ocelot a master at cowboy style western shootouts and a trained killer at torturing, Psycho Mantis with the ability to read peoples minds and navigate objects with telekinetic powers, Sniper Wolf a Deadly and sexy female sniper able to wait for days and months for a target and nail it with perfection from any given range, Vulcan Raven a Tough Shaman Indian blessed with spiritual powers. He’s equipped with an aircraft’s machine gun and knows how to use it, also able to resist cold temperatures, Decoy Octopus, a mastermind at disguising people’s features from the physical features right down to the blood. Terrorist leader Liquid Snake has hired an army of genome soldiers which are genetically improved troops to increase their physical strengths and senses from the genes. Now the Demand of FOXHOUND was clear. FOX HOUND wanted to insert Big Boss’s genes into the Genome Army…

Its up to Snake to put an end to the reign of terrorism and nuclear warfare once again. Will he be successful?