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1.Shivashankar HN. and Pandey, A. A novel mode of activating the JAK-STAT signaling pathway. Trends in Biochemical Sciences. 27, 336

2. A Comprehensive Analysis and Functional Annotation of the Human X Chromosome.
H. C. Harsha1, Shubha Suresh, Nandan Deshpande, K. Shanker, A. J. Yatish, Babylakshmi Muthusamy, B. P. Rashmi, K. N. Chandrika, N. Padma, M. A. Ramya,H. N. Shivashankar,Suraj Peri, Ramars Amanchy, Dipanwita Roy Choudhury, M. P. Kavitha, R. Saravana, Vidya Niranjan, T. K. B. Gandhi, Neelanjana Ghosh, Sreenath Chandran, Minal Menezes, Mary Joy, Krishna S. Deshpande1, Chaerkady Raghothama,C. K. Prasad, and Akhilesh Pandey.In Press

3.Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, Ramya MA, Zhao Z, Chandrika KN, Padma N, Harsha HC, Yatish AJ, Kavitha MP, Menezes M, Choudhury DR, Suresh S, Ghosh N, Saravana R, Chandran S, Krishna S, Joy M,
Anand SK, Madavan V, Joseph A, Wong GW, Schiemann WP, Constantinescu SN, Huang L, Khosravi-Far R, Steen H, Tewari M, Ghaffari S, Blobe GC, Dang CV, Garcia JG, Pevsner J, Jensen ON, Roepstorff, P, Deshpande KS, Chinnaiyan AM, Hamosh A, Chakravarti A, Pandey A.

Development of human protein reference database as an initial platform for approaching systems biology in humans.Genome Res. 2003 Oct; 13(10): 2363-71.

4.Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP,Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS,Pandey A.

Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 2004 Jan 1; 32(1): D497-501.

5.An exhaustive annotation and analysis of the human plasma proteome.Submitted