ConSite - Transcription factor binding site detection using phylogenetic footprinting

dbMTN - Multiple Tissue Northern Blot Comparison Tool

GeneLynx - A portal to the human genome

JASPAR - Transcription Factor Binding Profile Database

MSCAN - Algorithm that detects clusters of transcription factor binding sites in genomic sequences

NHRscan - A computational predictor of nuclear hormone receptor binding sites

NovelFam3000 - A bioinformatics tool created to accelerate characterization of gene families sharing uncharacterized protein domains

oPOSSUM - Web-based analysis of over-represented transcription factor binding sites

oPOSSUM2 - Web-based analysis of over-represented ranscription factor binding sites, version 2.0

OrthoSeq - Alignment of DNA sequences

PAZAR - An open-access system for the collection and dissemination of regulatory sequence annotation

Phylofoot - Tools for phylogenetic footprinting

SAGE2Splice - A tool that uses unmapped SAGE tags to predict novel splice junctions in the genome

TFBS - Perl modules for transcription factor binding site detection and analysis

Ulysses - Protein Interactions Conserved Across Evolution

Project Websites

Expression platform comparison

Ulysses project details