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Following the Siege of Asgard and the revelation of Osborn's insanity, the U.S. government disbanded H.A.M.M.E.R. Although Steve Rogers, now installed in Osborn's position by the U.S. president, had the opportunity of rebuilding S.H.I.E.L.D., he decided to instead rely solely on his shadow ops task force, the Secret Avengers.

After the return of Norman Osborn and H.A.M.M.E.R., Steve Rogers rebuild S.H.I.E.L.D. from zero, with agents who could be trusted, building a new Helicarrier and giving Daisy Johnson directorship. The new S.H.I.E.L.D. subsequently saved US Army Ranger Marcus Johnson from mercenaries hired by the Leviathan, and when he discovered he was the son of Nick Fury, he and his army friend Phil Coulson joined the storied security agency. One of the first measures of the new S.H.I.E.L.D. against the appearance of new super-human threats was to create their own Avengers unit.

Daisy Johnson

Nick Fury Jr.
Agent Phil Coulson
Maria Hill
Timothy "Dum Dum" Dugan
Agent 13

The Secret Avengers

The Heli-Carrier