ConSite - Transcription factor binding site detection using phylogenetic footprinting
dbMTN - Multiple Tissue Northern Blot Comparison Tool
GeneLynx - A portal to the human genome
JASPAR - Transcription Factor Binding Profile Database
MSCAN - Algorithm that detects clusters of transcription factor binding sites in genomic sequences
NHRscan - A computational predictor of nuclear hormone receptor binding sites
NovelFam3000 - A bioinformatics tool created to accelerate characterization of gene families sharing uncharacterized protein domains
oPOSSUM - Web-based analysis of over-represented transcription factor binding sites
oPOSSUM2 - Web-based analysis of over-represented ranscription factor binding sites, version 2.0
OrthoSeq - Alignment of DNA sequences
PAZAR - An open-access system for the collection and dissemination of regulatory sequence annotation
Phylofoot - Tools for phylogenetic footprinting
SAGE2Splice - A tool that uses unmapped SAGE tags to predict novel splice junctions in the genome
TFBS - Perl modules for transcription factor binding site detection and analysis
Ulysses - Protein Interactions Conserved Across Evolution
Project Websites
Expression platform comparison
Ulysses project details