| Pick # | Round 1 | Pick # | Round 2 | Pick # | Round 3 | ||
| 1 | GB- | 1 | GB- | 1 | GB- | ||
| GB | Brandon Moss | GB | Justin Maxwell | GB | Tony Cruz | ||
| 2 | Pa- | 2 | IN- | 2 | Alb- | ||
| Alb | Luis Mendoza | Alb | Scott Feldman | Alb | Luis Valbuena | ||
| 3 | Cre- | 3 | Cre- | 3 | Cre- | ||
| Cre | Justin Ruggiano | Cre | Luis Perez | Cre | Tim Dillard | ||
| 4 | Lex- | 4 | Lex- | 4 | Lex- | ||
| Lex | Chris Nelson | Lex | Oliver Perez | Lex | Carlos Corporan | ||
| 5 | NH- | 5 | NH- | 5 | Can- | ||
| NH | Logan Forsythe | NH | Raul Valdes | NH | Manny Corpas | ||
| 6 | Vt- | 6 | Can- | 6 | GM- | ||
| GM | Craig Stammen | GM | Fernando Rodriguez | GM | Jayson Nix | ||
| 7 | VT- | 7 | Dun- | 7 | Dun- | ||
| Dun | Scott Atchison | Dun | Josh Harrison | Dun | Joe Mather | ||
| 8 | Pa- | 8 | SL- | 8 | Pa- | ||
| Pa | Luis Cruz | Pa | Jarrod Dyson | Pa | Victor Marte | ||
| 9 | NE- | 9 | NE- | 9 | NE- | ||
| NE | Gregor Blanco | NE | Kevin Frandsen | NE | Chris Stewart | ||
| 10 | Dun- | 10 | Can- | 10 | GM- | ||
| Can | Jonathan Broxton | Can | Chad Gaudin | Can | Matt Diaz | ||
| 11 | Cro- | 11 | Mun- | 11 | Cro- | ||
| Cro | Ronald Belisario | Cro | Joe Thatcher | Cro | Omar Quintanilla | ||
| 12 | Yk- | 12 | Gle- | 12 | Gle- | ||
| Yk | Jared Burton | Yk | Daniel Nava | Yk | Ezequiel Carrera | ||
| 13 | Gle- | 13 | Key- | 13 | Gle- | ||
| Gle | Eric Stults | Gle | John Baker | Gle | Scott Maine | ||
| 14 | Cro- | 14 | Kal- | 14 | SL- | ||
| SL | Elliot Johnson | SL | Chris R. Young | SL | Cody Ransom | ||
| 15 | Mun- | 15 | Pa- | 15 | Mun- | ||
| Mun | Wesley Wright | Mun | Manny Parra | Mun | Emmanuel Burriss | ||
| 16 | Lon- | 16 | Kal- | 16 | Lon- | ||
| Lon | Jordan Norberto | Lon | Travis Ishikawa | Lon | Chad Tracy | ||
| 17 | Yk- | 17 | Cle- | 17 | Cle- | ||
| Cle | Brayan Villarreal | Cle | Daisuke Matsuzaka | Cle | Ross Ohlendorf | ||
| 18 | Cre- | 18 | Gle- | 18 | Gle- | ||
| MC | Alexi Amarista | MC | Carlos Torres | MC | Scott Moore | ||
| 19 | IN- | 19 | IN- | 19 | IN- | ||
| IN | Clay Rapada | IN | Scott Podsednik | IN | Cesar Izturis | ||
| 20 | Can- | 20 | Can- | 20 | Can- | ||
| VT | Josh Roenicke | VT | Vincente Padilla | VT | Vin Mazzaro | ||
| 21 | Key- | 21 | Key- | 21 | Key- | ||
| Key | Kevin Jepsen | Key | Austin Kearns | Key | Kila Ka'aihue | ||
| 22 | Kal- | 22 | Kal- | 22 | Kal- | ||
| Kal | Joaquin Arias | Kal | Dewayne Wise | Kal | Chris Gimenez | ||
| 23 | NY- | 23 | NY- | 23 | NY- | ||
| NY | Brandon Lyon | NY | Justin Germano | NY | Danny Worth | ||
| 24 | NY- | 24 | Mun- | 24 | EY- | ||
| EY | D.J.LeMahieu | EY | Josh Kinney | EY | Steve Pearce | ||
| Pick # | Round 4 | ||||||
| 1 | GB- | ||||||
| GB | Tony Abreu | ||||||
| 2 | Alb- | ||||||
| Alb | John Hester | ||||||
| 3 | Cre- | ||||||
| Cre | Fernando Abad | ||||||
| 4 | Lex- | ||||||
| Lex | Brad Penny | ||||||
| 5 | NH- | ||||||
| NH | Donnie Murphy | ||||||
| 6 | GM- | ||||||
| GM | Taylor Teagrden | ||||||
| 7 | Dun- | ||||||
| Dun | Brian Bixler | ||||||
| 8 | Pa- | ||||||
| Pa | Alex Hinshaw | ||||||
| 9 | NE- | ||||||
| NE | Michael Martinez | ||||||
| 10 | Can- | ||||||
| Can | Alberto Gonzalez | ||||||
| 11 | Cro- | ||||||
| Cro | Will Rhymes | ||||||
| 2013 | Free Agent Draft | ||||||
| 6:00 PM | |||||||
| 2/22/2013 | |||||||