Rogue has appeared in many an X-men series since her first appearence in the late 1980's, and below, since naming EVERY issue and episode would take time I currently don't possess, I've done my best to name the series she has appeared in. One of these days, I will try to get some of the issue numbers and episode names. Her most memorable appearances ARE listed though.

X-men Series #1

X-men Series #2

Uncanny X-men:
UXM #182
UXM #239 through approx. 242 (Inferno Series)
UMX #269 (Rogue VS the Original Ms. Marvel)
UXM #305
UXM #307 (Bloodties Crossover series)
UXM #348
UXM #350 (Trial Of Gambit)

Rogue Limited Series #1 issues 1-4

Rogue Icons Series issues 1-4

Pizza Hut X-men comics Limited Series
#1

The Age Of Apocolypse Series
Covered in "The Amazing X-men, X-men Omega, The Astonishing X-men, Gambit and The X-ternals"

Gambit Limited Series #1

Gambit & Bishop - Sons of The Atom
G&B Genesis

Xtreme X-men Series (Constant Appearances)

Xtreme X-men Savage Land (Constant Appearances)

The X-men Animated Series (Constant Appearances)
(most memorable episodes in no particular order:)
The Cure
Bloodties

X-men Evolution
(most memorable episodes in no particular order:)
Rogue Recruit
Turn Of The Rogue
On Angel's Wings
Walk On The Wild Side
The Stuff Of Heros
The Stuff Of Villains
Power Surge
Self-Posessed