Episode songs
Rinbu Revolution (full version)
Truth (full version)
Virtual Star Hasseigaku
Zettai Unmei Mokushiroku
Dona Dona
Missing Link

Duel Themes in the Student Council Saga
When Where Who Which
Nikutai no Naka no Koseidai
Spira Mirabilis Gekijou
Tenshi Souzou Sunawachi Hikari
Last Evolution (Shinka Kakumei Zenya)
Fuuin Jubaku
Nanibito mo Kataru Koto Ari

Duel Themes in the Black Rose Saga
Fujingenkon Gattaijutsu
Kakuu Kakokei Majinai
Chikyuu wa Jinbutsu Chinretsushitsu
Ensuikei Zettairan Algebra
Gentouchouga Juuroku Seiki
Seijuku Nenrei Toumeiki
Watashi Kuusou Seimeitai

Duel Themes in the Ohtori Akio Saga
Heizoku Uchuu ni Fumetsu no Koutei
Tenshi Androgynous
Watashi Banbutsu Hyakufushigi
Tennen Douhou Kyuuden Enkinhou no Sho

Duel Themes in the Apocalypse Saga
Guui Guuwa Guu-est
Tanai Tokei Toshi Orrery

Music from Adolescense Mokushiroku
Toki ni Ai wa
Shura - Nikutai Seiza Alpha Psi Zeta Seiun
Yomigaere! Mukyuu no Rekishi "Chuusei" yo (duel version)
Fiancee ni Naritai

Songs from the musical
Tsuyoku Kedakaku
Oujisama ga Ii
Sekai wo Kakumei suru Tame ni
Kagee Shoujo
Bara no Hana Yome
Welcome 2
Arigatou Ai wo
Mamotte Hoshii
Butokai no Yoru ni
Onna no Ko no Kisetsu

Tenjousajiki
Hahasuhannyata
Kurama Tengu
Jashuumon
Tokyo Junrei Uta
Doko e, Doko e to Satsu!

Utinam Reviviscat Medium Aevum
Astrolagous Chikyuu Sugoroku
Rekishi Bourou [Moji Sabaku]
Puchi Banshou no Seimei Kodoku Shi
In the Hands of the World
Suiteki Sunawachi Banyuu Shigen
Kaigetsu Ai ni Shisu
Zettai Miwaku
Deforme Deja Vu
Reminiscence Metamorphosis (arano yori)
Shura: Nikutai Seiza Alpha Psi Zeta Seiun
Warera Mizukara wo Suteta Datenshi Nari
Yomigaere! Mukyuu no Rekishi "Chuusei" yo (original version)

Other
Gertsen no Kubi
Sakasama Boku to Boku no Heya